GERMINATION OF RESTING STAGES OF DIATOMS AND DINOFLAGELLATES IN MARINE SEDIMENTS FROM TWO UPWELLING AREAS OF CHILE

Con el fin de evaluar la potencial germinación de los estados de resistencia de las diatomeas y dinofiagelados preservados en sedimentos superficiales, se cultivaron bajo condiciones de laboratorio sedimentos de las bahías de Mejillones (23° S) y Concepción (36° S), Chile: Ciclo L:0 12:12 h, intensidad de luz 140 umol m²s_1, temperatura ambiente y 35,4 unidades de salinidad. Las principales especies de diatomeas presentes en los sedimentos fueron Skeletonema japonicum y esporas de Chaetoceros. Los quistes de dinofiagelados estuvieron representados por Diplopsalis, Scrippsiella, Woloszynskia y las especies Protoperidinium avellanum y P. leonis. Después de 20 días de cultivo, se registró germinación y crecimiento de S. japonicum y de varias especies de Chaetoceros, sin embargo su abundancia fue baja. Las diatomeas con crecimiento abundante fueron Stauroneis legleri, Pseudostaurosira trainorii, Pseudostaurosira sp.l, Pseudostaurosira sp. 2 y Navícula pseudoreinhardtii. El dinoflagelado Woloszynskia sp. también germinó y creció abundantemente. Este trabajo incluye una breve descripción de las especies cultivadas y algunos aspectos de su ecología. Se discuten las posibles causas de la pobre germinación de las diatomeas planctónicas, siendo la baja concentración de oxígeno disuelto en las aguas de fondo uno de los principales factores que presumiblemente afectaron la sobrevivencia de las esporas de resistencia. With the aim to assess germination of diatom and dinofiagellates resting spores we cultured under laboratory conditions surface sediments collected in the Mejillones Bay (23° S) and off Concepción (36° S), Chile. These sediments were cultured in the laboratory with a 12:12 h L/D cycle, light intensity of 140 umol m² s"¹, at room temperature, and with a salinity of 35.4 units. The main diatom species in the sediments were Skeletonema japonicum and Chaetoceros spores. Dinofiagellate cysts were represented by the genera Diplopsalis, Scrippsiella, and Woloszynskia and the species Protoperidinium avellanum and P. leonis. After 20 days of culturing, germination and growth was recorded for S. japonicum and several of the Chaetoceros species, although their abundance was low. The diatoms with abundant growth were Stauroneis legleri, Pseudostaurosira trainorii, Pseudostaurosira sp.l, Pseudostaurosira sp. 2, and Navícula pseudoreinhardtii. The dinofiagellate Woloszynskia sp. also germinated and grew abundantly in the culture. This study includes a brief description of the cultured species and some aspects of their ecology. In addition, we discuss the possible causes for low levels of germination in planktonic diatoms, finding low dissolved oxygen concentrations in the bottom waters to be one of the main factors that presumably affected the survival of resting spores in the sediment

Paracentrotus lividus roe enhancement by a short-time rearing in offshore cages using two agar-based experimental feed

In this study, we tested the effect of two agar-based biocomposites (differing for the fish meal source), on the Paracentrotus lividus gonad cycle progression and biochemical composition, in an offshore pilot scale trial. The purpose of this study was to identify a feeding regime for P. lividus that would allow adequate gonadal growth without accelerating the gamete maturation, in order to extend the market period. The purpose was pursued through the use of agar as a binding agent in the manufacturing of biocomposites to be used as feed for P. lividus and the realization of special offshore cages. The gonad index, histology, biochemical composition of fatty acids (FA) and free amino acids (FAA) and volatile molecule fingerprint were evaluated. Both the gonad index and the histological analysis showed a slower gametogenesis progression in the gonads of caged sea urchins with respect to the field collected ones, consistent with our previous results obtained testing a similar feed composition in a recirculating system. The amount and the relative proportions of FA and FAA in the gonads of wild and cultured gonads were similar, while the analysis of the volatile substances of the gonads of the sea urchin conducted using the electronic nose, shows that they vary as a result of the different feeding treatments. These results show that P. lividus sea urchins can be housed, under this feeding regime during the recovery phase of the gonads, without acceleration of the maturation of the gametes and thus in conditions to allow the extension of the market period. Moreover, the here tested agar-based biocomposites make it possible to reduce the management costs of the rearing system as they need to be replaced only once a week, and its environmental impact as they guarantee a limited nutrient dispersion in the water

Cryptic species in the parasitic Amoebophrya species complex revealed by a polyphasic approach

As critical primary producers and recyclers of organic matter, the diversity of marine protists has been extensively explored by high-throughput barcode sequencing. However, classification of short metabarcoding sequences into traditional taxonomic units is not trivial, especially for lineages mainly known by their genetic fingerprints. This is the case for the widespread Amoebophrya ceratii species complex, parasites of their dinoflagellate congeners. We used genetic and phenotypic characters, applied to 119 Amoebophrya individuals sampled from the same geographic area, to construct practical guidelines for species delineation that could be applied in DNA/RNA based diversity analyses. Based on the internal transcribed spacer (ITS) regions, ITS2 compensatory base changes (CBC) and genome k-mer comparisons, we unambiguously defined eight cryptic species among closely related ribotypes that differed by less than 97% sequence identity in their SSU rDNA. We then followed the genetic signatures of these parasitic species during a three-year survey of Alexandrium minutum blooms. We showed that these cryptic Amoebophrya species co-occurred and shared the same ecological niche. We also observed a maximal ecological fitness for parasites having narrow tointermediate host ranges, reflecting a high cost for infecting a broader host range. This study suggests that a complete taxonomic revision of these parasitic dinoflagellates is long overdue to understand their diversity and ecological role in the marine plankton

Dinoflagellate fossils: Geological and biological applications

International audienc

The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy

The interrogation of genetic markers in environmental meta-barcoding studies is currently seriously hindered by the lack of taxonomically curated reference data sets for the targeted genes. The Protist Ribosomal Reference database (PR2, http://ssu-rrna.org/) provides a unique access to eukaryotic small sub-unit (SSU) ribosomal RNA and DNA sequences, with curated taxonomy. The database mainly consists of nuclear-encoded protistan sequences. However, metazoans, land plants, macrosporic fungi and eukaryotic organelles (mitochondrion, plastid and others) are also included because they are useful for the analysis of high-troughput sequencing data sets. Introns and putative chimeric sequences have been also carefully checked. Taxonomic assignation of sequences consists of eight unique taxonomic fields. In total, 136 866 sequences are nuclear encoded, 45 708 (36 501 mitochondrial and 9657 chloroplastic) are from organelles, the remaining being putative chimeric sequences. The website allows the users to download sequences from the entire and partial databases (including representative sequences after clustering at a given level of similarity). Different web tools also allow searches by sequence similarity. The presence of both rRNA and rDNA sequences, taking into account introns (crucial for eukaryotic sequences), a normalized eight terms ranked-taxonomy and updates of new GenBank releases were made possible by a long-term collaboration between experts in taxonomy and computer scientist

The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy

International audienceThe interrogation of genetic markers in environmental meta-barcoding studies is currently seriously hindered by the lack of taxonomically curated reference data sets for the targeted genes. The Protist Ribosomal Reference database (PR2, http://ssu-rrna.org/) provides a unique access to eukaryotic small sub-unit (SSU) ribosomal RNA and DNA sequences, with curated taxonomy. The database mainly consists of nuclear-encoded protistan sequences. However, metazoans, land plants, macrosporic fungi and eukaryotic organelles (mitochondrion, plastid and others) are also included because they are useful for the analysis of high-troughput sequencing data sets. Introns and putative chimeric sequences have been also carefully checked. Taxonomic assignation of sequences consists of eight unique taxonomic fields. In total, 136 866 sequences are nuclear encoded, 45 708 (36 501 mitochondrial and 9657 chloroplastic) are from organelles, the remaining being putative chimeric sequences. The website allows the users to download sequences from the entire and partial databases (including representative sequences after clustering at a given level of similarity). Different web tools also allow searches by sequence similarity. The presence of both rRNA and rDNA sequences, taking into account introns (crucial for eukaryotic sequences), a normalized eight terms ranked-taxonomy and updates of new GenBank releases were made possible by a long-term collaboration between experts in taxonomy and computer scientists

GlobalHAB - the International SCOR-IOC Science Program on Harmful Algal Blooms. Activities 2020-2021 and Plans for 2021-2022

The partial renovation took place on May 2020. It was conducted virtually due to the Covid-19 pandemic. Since then, all the communication has been conducted by email and virtual meetingsThe GlobalHAB Scientific Steering Committee (SSC) acknowledges the financial and logistic support received from SCOR and IOC during the 2020-2021 period and for the activities postponed to 2022 due to the Covid-19 pandemicsPeer reviewe

Marine protist diversity in European coastal waters and sediments as revealed by high-throughput sequencing

International audienceAlthough protists are critical components of marine ecosystems, they are still poorly characterized. Here we analysed the taxonomic diversity of planktonic and benthic protist communities collected in six distant European coastal sites. Environmental deoxyribonucleic acid (DNA) and ribonucleic acid (RNA) from three size fractions (pico-, nano- and micro/mesoplankton), as well as from dissolved DNA and surface sediments were used as templates for tag pyrosequencing of the V4 region of the 18S ribosomal DNA. Beta-diversity analyses split the protist community structure into three main clusters: picoplankton-nanoplankton-dissolved DNA, micro/mesoplankton and sediments. Within each cluster, protist communities from the same site and time clustered together, while communities from the same site but different seasons were unrelated. Both DNA and RNA-based surveys provided similar relative abundances for most class-level taxonomic groups. Yet, particular groups were overrepresented in one of the two templates, such as marine alveolates (MALV)-I and MALV-II that were much more abundant in DNA surveys. Overall, the groups displaying the highest relative contribution were Dinophyceae, Diatomea, Ciliophora and Acantharia. Also, well represented were Mamiellophyceae, Cryptomonadales, marine alveolates and marine stramenopiles in the picoplankton, and Monadofilosa and basal Fungi in sediments. Our extensive and systematic sequencing of geographically separated sites provides the most comprehensive molecular description of coastal marine protist diversity to date

On Imprimitive Representations of Finite Reductive Groups in Non-defining Characteristic

In this paper, we begin with the classification of Harish-Chandra imprimitive representations in non-defining characteristic. We recall the connection of this problem to certain generalizations of Iwahori-Hecke algebras and show that Harish-Chandra induction is compatible with the Morita equivalence by Bonnaf\'{e} and Rouquier, thus reducing the classification problem to quasi-isolated blocks. Afterwards, we consider imprimitivity of unipotent representations of certain classical groups. In the case of general linear and unitary groups, our reduction methods then lead to results for arbitrary Lusztig series

GlobalHAB (IOC-UNESCO and SCOR): Latinamerica contribution to the international coordination for sound knowledge of HABs to manage their impacts

12th International Phycological CongressThe Global Harmful Algal Blooms (GlobalHAB, www.global hab.info) Program is aimed at fostering international cooperative research directed toward improving the prediction of harmful algal bloom (HAB) events in aquatic ecosystems, and providing sound knowledge for policy- and decision-making to manage and mitigate HAB impacts in a changing planet. GlobalHAB is sponsored by the Intergovernmental Oceanographic Commission (IOC) of UNESCO and the Scientific Committee on Oceanic Research (SCOR). GlobalHAB was launched in 2016 and will last for 10 years. The GlobalHAB scientific objectives are focused on the research of taxonomic, ecological and toxicology knowledge gaps, on the effects of climate change on HABs and their biogeographic distribution, the implementation of HABs observing systems, and overall, to promote aquatic food and water safety and security. The GlobalHAB program has an international nature, and collaborates with international entities and programs that share objectives on HABs research, management and mitigation, as was already done by the former program GEOHAB. In particular, scientists from Latin America were active participants in GEOHAB and today Latin America is key in the implementation of GlobalHAB. Extreme HAB events affecting aquaculture sites and natural environments, Sargassum beachings, HABs monitoring programs, ciguatera fish poisoning, toxin transfer through the food webs, are examples of topics where scientists in Latin America are very active and thus, contribute to the implementation of GlobalHAB. Scientists are invited to participate in GlobalHAB by designing and endorsing scientific activities linked to the goals of GlobalHAB, and by participating in other international activitiesThe GlobalHAB (www.globalhab.info) international program is funded by IOC UNESCO and SCORPeer reviewe